Laura Jarboe’s Publications

2016

2015

  • Y. Shen, L. Jarboe, R.C. Brown, Z. Wen* “A thermochemical-biological hybrid processing of lignocellulosic biomass for producing fuels and chemicals” Biotechnology Advances 33(8):1799-813 (2015) http://www.sciencedirect.com/science/article/pii/S0734975015300446
  • J.P. Bacik*, J.R. Klesmith, T.A. Whitehead, L.R. Jarboe, C.J. Unkefer, B.L. Mark, R. Michalczyk “Producing glucose-6-phosphate from cellulosic biomass: structural insights into levoglucosan bioconversion” Journal of Biological Chemistry 290:26638-26648 (2015) http://www.jbc.org/content/early/2015/09/09/jbc.M115.674614
  • C. Liao, X. Liang, M. Soupir*, L. Jarboe “Cellular, particle and environmental parameters influencing attachment in surface waters: a review” Journal of Applied Microbiology 119(2):315-330 (2015) http://onlinelibrary.wiley.com/doi/10.1111/jam.12860/full
  • J. Trcek*, N.P. Mira, L. Jarboe* “Adaptation and tolerance of Bacteria against Acetic Acid” Applied Microbiology and Biotechnology 99(15):6215-29 (2015)
    http://link.springer.com/article/10.1007%2Fs00253-015-6762-3
  • L.A. Royce, J.M. Yoon, Y. Chen, E. Rickenbach, J.V. Shanks, L. Jarboe*, “Evolution for exogenous octanoic acid tolerance improves carboxylic acid production and membrane integrity” Metabolic Engineering 29:180-188 (2015)
    http://www.sciencedirect.com/science/article/pii/S1096717615000403
  • Y. Fu, J.M. Yoon, L. Jarboe, J. Shanks*, “Metabolic Flux Analysis of Escherichia coli MG1655 under Octanoic Acid (C8) Stress” Applied Microbiology and Biotechnology 99:4397-408 (2015) http://link.springer.com/article/10.1007/s00253-015-6387-6/fulltext.html

2014

  • M.R. Rover, P.A. Johnston, T. Jin, R.G. Smith, R.C. Brown, L. Jarboe. “Production of Clean Pyrolytic Sugars for Fermentation” ChemSusChem 2014 DOI: 10.1002/cssc.201301259
  • X. Liang, M. Soupir, S. Rigby, L. Jarboe, W. Zhang. “Flow cytometry is a promising and rapid method for differentiating between freely suspended E. coli and E. coli attached to clay particles” Journal of Applied Microbiology 2014 DOI: 10.1111/jam.12660
  • A.L. Teh, D. Layton, D.R. Hyduke, L. Jarboe, D.K. Rollins, Sr. “Data Mining Based on Principal Component Analysis: Application to Nitric Oxide Response in Escherichia coli” Journal of Statistical Science and Application 2014 2:1-18.
  • J.T. Claypool, D.R. Raman, L.R. Jarboe, D.R. Nielsen. “Technoeconomic evalulation of bio-based styrene production by engineered Escherichia coli” Journal of Industrial Microbiology and Biotechnology 2014 41(8):1211-1216 DOI 10.1007/s10295-014-1469-5
  • L.A. Royce, E. Boggess, Y. Fu, P. Liu, J.V. Shanks, J. Dickerson, L. Jarboe. “Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage” PLOS ONE 2014 9(2):e89580 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0089580

2013

  • Z. Chi, M. Rover, E. Jun, M. Deaton, P. Johnston, R.C. Brown, Z. Wen, L. Jarboe* “Overliming Detoxification of Pyrolytic Sugar Syrup for Direct Fermentation of Levoglucosan to Ethanol” Bioresource Technology 2013 150:220-227 http://dx.doi.org/10.1016/j.biortech.2013.09.138
  • L.R. Jarboe*, L.A. Royce, P. Liu “Understanding biocatalyst inhibition by carboxylic acids” Frontiers in Microbiology 4:272 doi:10.3389/fmicb.2013.00272
    http://www.frontiersin.org/Microbial_Physiology_and_Metabolism/10.3389/fmicb.2013.00272/full
  • L.A. Royce, P. Liu, M.J. Stebbins, B.C. Hanson, L.R. Jarboe* “The damaging effects of short-chain fatty acids on Escherichia coli membranes” Applied Microbiology and Biotechnology 2013 97:8317 DOI 10.1007/s00253-013-5113-5 http://link.springer.com/article/10.1007%2Fs00253-013-5113-5
  • L. Jarboe*, Z. Chi “Inhibition of microbial biocatalysts by biomass-derived aldehydes and methods for engineering tolerance” pp 101-120 New Developments in Aldehydes Research 2013. ISBN #978-1-62417-090-4.
  • Y. Liang, X. Zhao, Z. Chi, M. Rover, P. Johnston, R. Brown, L. Jarboe, Z. Wen* “Utilization of acetic acid-rich pyrolytic bio-oil by microalga Chlamydomonas reinhardtii: Reducing bio-oil toxicity and enhancing algal toxicity tolerance” Bioresource Technology 2013 133:500 – 506. http://dx.doi.org/10.1016/j.biortech.2013.01.134
  • L.A. Royce, E. Boggess, T. Jin, J. Dickerson, L. Jarboe*. “Identification of Mutations in Evolved Bacterial Genomes” Methods in Molecular Biology (vol 985): Systems Metabolic Engineering: Methods and Protocols, Hal Alper (ed). 2013 http://dx.doi.org/10.1007/978-1-62703-299-5
  • P. Liu, A. Chernyshov, T. Najdi, Y. Fu, J. Dickerson, S. Sandmeyer, L. Jarboe* “Membrane stress caused by octanoic acid in Saccharomyces cerevisiae” Applied Microbiology and Biotechnology 2013 97(7):3239 – 3251. 10.1007/s00253-013-4773-5. http://link.springer.com/article/10.1007%2Fs00253-013-4773-5
  • K. B. Kautharapu, J. Rathmacher, L. Jarboe* “Growth condition optimization for docosahexaenoic acid (DHA) production by Moritella marina MP-1” Applied Microbiology and Biotechnology 2013 97(7):2859 – 2866. DOI: 10.1007/s00253-012-4529-7 http://www.springerlink.com/content/n37573r377502523/

2012

  • L. Jarboe*, P. Liu, K. Kautharapu, L.O. Ingram “Optimization of enzyme parameters for fermentative production of biorenewable fuels and chemicals” Computational and Structural Biotechnology Journal. October 2012. 3(4) e201210005, http://dx.doi.org/10.5936/csbj.201210005
  • K. B. Kautharapu, L. Jarboe*, “Genome sequence of psychrophilic deep sea bacterium Moritella marina MP-1.” Journal of Bacteriology, November 2012. 194:6296-6297.
    http://jb.asm.org/cgi/content/abstract/194/22/6296?etoc
  • P. Liu, L. Jarboe* “Metabolic Engineering of biocatalysts for carboxylic acids production” Computational and Structural Biology 2012. 3(4) e201210011, http://dx.doi.org/10.5936/csbj.201210011

2011

  • L. R. Jarboe*, Ping Liu, Liam Royce. “Engineering inhibitor tolerance for the production of biorenewable fuels and chemicals”. Current Opinion in Chemical Engineering. 2011 (invited) 1:38-42. DOI 10.1016/j.coche.2011.08.003
  • Liu, P., M. L. Soupir, M. Zwonitzer, B. Huss, L. Jarboe*. “Antibiotic Resistance in Agricultural E. coli Isolates is Associated with Attachment to Quartz” AEM. 2011. 77(19):6945-6953. doi:10.1128/AEM.00717-11
  • L. R. Jarboe*, Z. Wen, D. W. Choi, R. C. Brown. “Hybrid thermochemical processing: fermentation of pyrolysis-derived bio-oil”. Applied Microbiology and Biotechnology. 2011 (invited) 91(6):1519-1523. 10.1007/s00253-011-3495-9. http://www.springerlink.com/openurl.asp?genre=article&id=doi:10.1007/s00253-011-3495-9
  • Donovan Layton, A. Ajjarapu, D. W. Choi, L. Jarboe*.  “Engineering ethanologenic Escherichia coli for levoglucosan utilization”.  Bioresource Technology. 2011 102:8318-8322. http://dx.doi.org/10.1016/j.biortech.2011.06.011

2010

  • Jarboe, L. R.* 2010. YqhD: A broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals, Applied Microbiology and Biotechnology. http://dx.doi.org/10.1007/s00253-010-2912-9
  • Turner, P. C., E. N. Miller, L. Jarboe, C. L. Baggett, K. T. Shanmugam, L.O. Ingram*  2010.  YqhC regulates transcription of the adjacent Escherichia coli genes yqhD and dkgA that are involved in furfural tolerance. J Industr Microbiol Biotechnol. DOI 10.1007/s10295-010-0787 -5. http://www.springerlink.com/content/d003u8203g763005/
  • Miller, E. N., P. C. Turner, L. R. Jarboe , L. O. Ingram*. 2010. Genetic changes that increase 5-hydroxymethyl furfural resistance in ethanol-producing Escherichia coli LY180. Biotechnology Letters . 32(5):661-667. http://www.springerlink.com/content/l147081327744512/
  • L. R. Jarboe, X. Zhang, X. Wang, J. C. Moore, K. T. Shanmugam, L. O. Ingram* 2010. Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology (invited) Journal of Biomedicine and Biotechnology. Article ID 761042 Cited: 1 http://www.hindawi.com/journals/jbb/2010/761042.html

2009

  • Miller, E. N., L. R. Jarboe, P. C. Turner, P. Pharkya, L. P. Yomano, S. W. York, K. T. Shanmugam, L. O. Ingram*. 2009. Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli strain LY180. Applied and Environmental Microbiogy. 75(19):6132-6141. http://aem.asm.org/cgi/content/full/75/19/613
  • Miller, E. N., L. R. Jarboe, L. P. Yomano, S. W. York, K. T. Shanmugam, L. O. Ingram*. 2009.  Silencing of NADPH-dependent Oxidoreductases (yqhD and dkgA) in Furfural-Resistant Ethanologenic Escherichia coli. Applied and Environmental Microbiology 75(13):4315-4323. http://aem.asm.org/cgi/content/full/75/13/4315
  • Jarboe L. R ., D. R. Hyduke, J. C. Liao*.  2009.  Systems Approaches to Unraveling Nitric Oxide Response Networks in Prokaryotes. Nitric Oxide (2nd Ed) Ed. L. Ignarro. Elsevier.

2008

  • Jarboe, L. R., D. R. Hyduke, L. M. Tran, K. J. Y. Chou and J. C. Liao*. 2008. Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis. Journal of Biological Chemistry 283(8):5148-5157. 1 co-first authors. http://www.jbc.org/cgi/content/full/280/11/10065
  • Luli, G. W., L. R. Jarboe, L. O. Ingram. 2008. The development of ethanologenic bacteria for fuel ethanol production. Bioenergy. 129-137.

2007

  • Jarboe, L. R., T. B. Grabar, L. P. Yomano, K. T. Shanmugam, L. O. Ingram*. 2007. Development of Ethanologenic Bacteria Advances in Biochemical Engineering: Biofuels. Ed. L. Olsson. Springer. http://www.springerlink.com/content/w34780x4t1gxrp55/
  • Hyduke, D. R., L. R. Jarboe, L. M. Tran, K. C. Chou and J. C. Liao*. 2007. Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli . PNAS 104(20):8484-8489. 1 co-first authors. http://www.pnas.org/content/104/20/8484
  • Jarboe, L. R., K. T. Shanmugam, L. O. Ingram. 2007. Ethanol Encyclopedia of Microbiology (3rd Ed) Ed. D. Majumder-Russell. Elsevier.

2004

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